Rationale and Objectives
We aimed to investigate the value of magnetic resonance image (MRI)-based radiomics
in predicting Ki-67 expression of breast cancer.
Methods
In this retrospective study, 159 lesions from 154 patients were included. Radiomic
features were extracted from contrast-enhanced T1-weighted MRI (C+MRI) and apparent
diffusion coefficient (ADC) maps, with open-source software. Dimension reduction was
done with reliability analysis, collinearity analysis, and feature selection. Two
different Ki-67 expression cut-off values (14% vs 20%) were studied as reference standard
for the classifications. Input for the models were radiomic features from individual
MRI sequences or their combination. Classifications were performed using a generalized
linear model.
Results
Considering Ki-67 cut-off value of 14%, training and testing AUC values were 0.785
(standard deviation [SD], 0.193) and 0.849 for ADC; 0.696 (SD, 0.150) and 0.695 for
C+MRI; 0.755 (SD, 0.171) and 0.635 for the combination of both sequences, respectively.
Regarding Ki-67 cut-off value of 20%, training and testing AUC values were 0.744 (SD,
0.197) and 0.617 for ADC; 0.629 (SD, 0.251) and 0.741 for C+MRI; 0.761 (SD, 0.207)
and 0.618 for the combination of both sequences, respectively.
Conclusion
ADC map-based selected radiomic features coupled with generalized linear modeling
might be a promising non-invasive method to determine the Ki-67 expression level of
breast cancer.
KEY WORDS
Abbreviations:
ADC (Apparent diffusion coefficient), AUC (Area under the receiver operating characteristic curve), BC (Breast cancer), C+MRI (Contrast-enhanced T1-weighted MRI), D (Dimensional), DCE-MRI (Dynamic contrast-enhanced magnetic resonance imaging), DWI (Diffusion-weighted echo-planar images), FLASH (Fast low angle shot), GLM (Generalized linear model), HER-2 (Human epithelial receptor-2), ICC (Intra-class correlation coefficient), LASSO (The least absolute shrinkage and selection operator), LoG (Laplacian of Gaussian), MCC (Matthews correlation coefficient), mi RNA (micro RNA), MRI (Magnetic resonance imaging), NAC (Neoadjuvant chemotherapy), TNBC (Triple negative breast cancer), PACS (Picture Archiving and Communication System), RNA (Ribonucleic acid), ROI (Region of interest), SD (Standard deviation), SUBT (Subtraction)To read this article in full you will need to make a payment
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REFERENCES
- Evaluating the potential usefulness of new prognostic and predictive indicators in node-negative breast cancer patients.J Natl Cancer Inst. 1993 Aug 4; 85: 1206-1219
- Assessing the clinical impact of prognostic factors: when is “statistically significant” clinically useful?.Breast Cancer Res Treat. 1998; 52: 305-319
- The Nottingham Prognostic Index in primary breast cancer.Breast Cancer Res and Treatment. 1992; 22: 207-219
- Protein biomarkers for subtyping breast cancer and implications for future research.Expert Rev Proteomics. 2018; 15: 131-152
- Identification of intrinsic imaging phenotypes for breast cancer tumors: preliminary associations with gene expression profiles.Radiology. 2014; 272: 374-384
- Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.J Natl Cancer Inst. 2006; 98: 262-272
- St Gallen International Expert Consensus on the primary therapy of early breast cancer: an invaluable tool for physicians and scientists.Ann Oncol. 2015; 26: 1519-1520
- St. Gallen/Vienna 2015: a brief summary of the consensus discussion.Breast Care (Basel). 2015; 10: 124-130
- Ki-67 labeling index as a predictor of response to neoadjuvant chemotherapy in breast cancer.Japanese J Clin Oncol. 2019; 49: 329-338
- Do we really need prognostic factors for breast cancer?.Breast Cancer Res and Treatment. 1994; 30: 117-126
- Prognostic and predictive factors in breast cancer.Cancer Treatment Rev. 2001; 27: 137-142
- Prognostic and predictive factors in early-stage breast cancer.The Oncologist. 2004; 9: 606-616
- Cell cycle analysis of a cell proliferation-associated human nuclear antigen defined by the monoclonal antibody Ki-67.J Immunol. 1984 Oct; 133: 1710-1715
- Ki-67 as prognostic marker in early breast cancer: a meta-analysis of published studies involving 12,155 patients.Br J Cancer. 2007; 96: 1504-1513
- Prognostic value of different cut-off levels of Ki-67 in breast cancer: a systematic review and meta-analysis of 64,196 patients.Breast Cancer Res Treat. 2015; 153: 477-491
- Strategies for subtypes–dealing with the diversity of breast cancer: highlights of the St. Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2011.Ann Oncol. 2011; 22: 1736-1747
- Personalizing the treatment of women with early breast cancer: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2013.Ann Oncol. 2013; 24: 2206-2223
- Tailoring therapies–improving the management of early breast cancer: St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2015.Ann Oncol. 2015; 26: 1533-1546
- Optimal Ki67 cut-off for luminal breast cancer prognostic evaluation: a large case series study with a long-term follow-up.Breast Cancer Res and Treatment. 2016; 157: 363-371
- Radiomics with artificial intelligence: a practical guide for beginners.Diagn Interv Radiol. 2019; 25: 485-495
- A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features.Br J Cancer. 2018; 119: 508-516
- A Radio-genomics Approach for identifying high risk estrogen receptor-positive breast cancers on DCE-MRI: preliminary results in predicting OncotypeDX risk scores.Sci Rep. 2016; 6: 21394
- Breast cancer: radiogenomic biomarker reveals associations among dynamic contrast-enhanced mr imaging, long noncoding rna, and metastasis.Radiology. 2015; 275: 384-392
- Computational approach to radiogenomics of breast cancer: Luminal A and luminal B molecular subtypes are associated with imaging features on routine breast MRI extracted using computer vision algorithms.J Magn Reson Imaging. 2015 Oct; 42: 902-907
- Applying a new quantitative global breast MRI feature analysis scheme to assess tumor response to chemotherapy.J Magn Reson Imaging. 2016; 44: 1099-1106
- Preoperative prediction of axillary lymph node metastasis in breast cancer using radiomics features of DCE-MRI.Sci Rep. 2019 19; 9: 2240
- Preoperative prediction of axillary lymph node metastasis in breast carcinoma using radiomics features based on the fat-suppressed T2 sequence.Acad Radiol. 2020; 27: 1217-1225
- Machine learning for medical imaging.Radiographics. 2017 Mar; 37: 505-515
- Radiomics: images are more than pictures, they are data.Radiology. 2016 Feb; 278: 563-577
- Textural differences between renal cell carcinoma subtypes: Machine learning-based quantitative computed tomography texture analysis with independent external validation.Eur J Radiol. 2018 Oct; 107: 149-157
- Identification of noninvasive imaging surrogates for brain tumor gene-expression modules.Proc Natl Acad Sci USA. 2008 Apr 1; 105: 5213-5218
- Radiogenomic analysis to identify imaging phenotypes associated with drug response gene expression programs in hepatocellular carcinoma.J Vasc Interv Radiol. 2007 Jul; 18: 821-831
- Unenhanced CT texture analysis of clear cell renal cell carcinomas: a machine learning-based study for predicting histopathologic nuclear grade.AJR Am J Roentgenol. 2019 Apr 11; : W1-W8
Djekidel M. Radiogenomics and Radioproteomics. OMICS J Radiology [Internet]. 2012 [cited 2021 Jan 24];02(02). Available from: https://www.omicsgroup.org/journals/radiogenomics-and-radioproteomics-2167-7964.1000115.php?aid=12184
- Magnetic resonance imaging texture analysis classification of primary breast cancer.Eur Radiol. 2016 Feb; 26: 322-330
- Radiogenomic analysis of breast cancer: luminal B molecular subtype is associated with enhancement dynamics at MR imaging.Radiology. 2014 Jul 15; 273: 365-372
- Deciphering genomic underpinnings of quantitative MRI-based radiomic phenotypes of invasive breast carcinoma.Sci Rep [Internet]. 2015 Dec 7; ([cited 2020 Aug 30];5. Available from:)
- Computerized three-class classification of MRI-based prognostic markers for breast cancer.Phys Med Biol. 2011 Sep 21; 56: 5995-6008
- Computerized image analysis for identifying triple-negative breast cancers and differentiating them from other molecular subtypes of breast cancer on dynamic contrast-enhanced mr images: a feasibility study.Radiology. 2014 Jul; 272: 91-99
- MR imaging radiomics signatures for predicting the risk of breast cancer recurrence as given by research versions of mammaprint, oncotype DX, and PAM50 gene assays.Radiology. 2016 Nov; 281: 382-391
- Prediction of malignancy by a radiomic signature from contrast agent-free diffusion MRI in suspicious breast lesions found on screening mammography.J Magn Reson Imaging. 2017; 46: 604-616
- Breast cancer Ki67 expression prediction by DCE-MRI radiomics features.Clin Radiol. 2018 Oct; 73: 909.e1-909.e5
- An MRI-based radiomics classifier for preoperative prediction of Ki-67 Status in Breast Cancer.Acad Radiol. 2018; 25: 1111-1117
- joint prediction of breast cancer histological grade and Ki-67 Expression Level Based on DCE-MRI and DWI radiomics.IEEE J Biomed Health Inform. 2020; 24: 1632-1642
- Invasive ductal breast cancer: preoperative predict Ki-67 index based on radiomics of ADC maps.Radiol Med. 2020 Feb; 125: 109-116
- Preoperative Prediction of Ki-67 status in breast cancer with multiparametric mri using transfer learning.Acad Radiol. 2021 Feb; 28: e44-e53
- Influence of MRI acquisition protocols and image intensity normalization methods on texture classification.Magn Reson Imaging. 2004 Jan; 22: 81-91
- Intrinsic dependencies of CT radiomic features on voxel size and number of gray levels.Med Phys. 2017 Mar; 44: 1050-1062
- Influence of gray level discretization on radiomic feature stability for different CT scanners, tube currents and slice thicknesses: a comprehensive phantom study.Acta Oncol. 2017 Nov; 56: 1544-1553
- Gray-level discretization impacts reproducible MRI radiomics texture features.PLoS One. 2019; 14e0213459
- Computational radiomics system to decode the radiographic phenotype.Cancer Res. 2017 01; 77: e104-e107
- A guideline of selecting and reporting intraclass correlation coefficients for reliability research.J Chiropr Med. 2016 Jun; 15: 155-163
- Invasive breast cancer: correlation of dynamic MR features with prognostic factors.Eur Radiol. 2003 Nov; 13: 2425-2435
- Magnetic resonance imaging of breast lesions–a pathologic correlation.Breast Cancer Res Treat. 2007 May; 103: 1-10
- Dynamic MR imaging of breast lesions: correlation with microvessel distribution pattern and histologic characteristics of prognosis.Radiology. 2006 May; 239: 351-360
- Correlation between numeric gadolinium-enhanced dynamic MRI ratios and prognostic factors and histologic type of breast carcinoma.AJR Am J Roentgenol. 2006 Aug; 187: 297-306
- Breast MR imaging: current indications and advanced imaging techniques.Radiol Clin North Am. 2010 Sep; 48: 1013-1042
- Diffusion-weighted imaging of breast cancer: correlation of the apparent diffusion coefficient value with prognostic factors.J Magn Reson Imaging. 2009 Sep; 30: 615-620
- Role of diffusion MRI in characterizing benign and malignant breast lesions.Indian J Radiol Imaging. 2009 Dec; 19: 287-290
- Breast carcinomas with strong high-signal intensity on T2-weighted MR images: Pathological characteristics and differential diagnosis.J Magnetic Resonance Imaging. 2007; 25: 502-510
- Is the presence of edema and necrosis on T2WI pretreatment breast MRI the key to predict pCR of triple negative breast cancer?.Eur Radiol. 2020 Jun; 30: 3363-3370
- Assessment of tumor heterogeneity by CT texture analysis: can the largest cross-sectional area be used as an alternative to whole tumor analysis?.Eur J Radiol. 2013 Feb; 82: 342-348
- Tumour heterogeneity of breast cancer: from morphology to personalised medicine.Pathobiology. 2018; 85: 23-34
- Relevance of spatial heterogeneity of immune infiltration for predicting risk of recurrence after endocrine therapy of er+ breast cancer.J Natl Cancer Inst. 2018; 110
- Morphologic and genomic heterogeneity in the evolution and progression of breast cancer.Cancers (Basel). 2020; 12
- Intratumoral Heterogeneity for Ki-67 index in invasive breast carcinoma: a study on 131 consecutive cases.Applied Immunohistochemistry & Molecular Morphology. 2017 Jun; 25: 338-340
- Evaluation of Ki-67 index in core needle biopsies and matched breast cancer surgical specimens.Arch Pathol Lab Med. 2018; 142: 364-368
- Breast MRI: state of the art.Radiology. 2019; 292: 520-536
Article info
Publication history
Published online: March 17, 2021
Accepted:
February 2,
2021
Received in revised form:
January 28,
2021
Received:
December 14,
2020
Identification
Copyright
© 2021 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.